#
#   - Bio::Affymetrix -
#   This spec file was automatically generated by cpan2rpm [ver: 2.028]
#   The following arguments were used:
#       --keep-pipes Bio-Affymetrix-0.5 2>&1
#   For more information on cpan2rpm please visit: http://perl.arix.com/
#

%define pkgname Bio-Affymetrix
%define filelist %{pkgname}-%{version}-filelist
%define NVR %{pkgname}-%{version}-%{release}
%define maketest 1

name:      perl-Bio-Affymetrix
summary:   Bio-Affymetrix - Modules to parse files produced by Affymetrix software
version:   0.5
release:   1
vendor:    Nick James <nick@arabidopsis,info>
packager:  Arix International <cpan2rpm@arix.com>
license:   Artistic
group:     Applications/CPAN
url:       http://www.cpan.org
buildroot: %{_tmppath}/%{name}-%{version}-%(id -u -n)
buildarch: noarch
prefix:    %(echo %{_prefix})
source:    http://search.cpan.org//CPAN/authors/id/S/SK/SKIPPY/Bio-Affymetrix-0.5.tar.gz

%description
The Affymetrix microarray system produces files in a variety of
formats. If this means nothing to you, these modules are probably not
for you :). This module parses CHP files. 

This module requires a Bio::Affymetrix::CDF object before it can do
anything. This must be supplied to the constructor. See the perldoc
for that to see how to use that module. The module can parse various
types of CHP file transparently. You can find out what type you have
by using the original_version() method.
    
All of the Bio::Affymetrix modules parse a file entirely into
memory. You therefore need enough memory to hold these objects. For
some applications, parsing as a stream may be more appropriate-
hopefully the source to these modules will give enough clues to make
this an easy task. 

You can also use this software to write CHP files (see the
write_to_file and write_to_filehandle methods).

#
# This package was generated automatically with the cpan2rpm
# utility.  To get this software or for more information
# please visit: http://perl.arix.com/
#

%prep
%setup -q -n %{pkgname}-%{version} 
chmod -R u+w %{_builddir}/%{pkgname}-%{version}

%build
grep -rsl '^#!.*perl' . |
grep -v '.bak$' |xargs --no-run-if-empty \
%__perl -MExtUtils::MakeMaker -e 'MY->fixin(@ARGV)'
CFLAGS="$RPM_OPT_FLAGS"
%{__perl} Makefile.PL `%{__perl} -MExtUtils::MakeMaker -e ' print qq|PREFIX=%{buildroot}%{_prefix}| if \$ExtUtils::MakeMaker::VERSION =~ /5\.9[1-6]|6\.0[0-5]/ '`
%{__make} 
%if %maketest
%{__make} test
%endif

%install
[ "%{buildroot}" != "/" ] && rm -rf %{buildroot}

%{makeinstall} `%{__perl} -MExtUtils::MakeMaker -e ' print \$ExtUtils::MakeMaker::VERSION <= 6.05 ? qq|PREFIX=%{buildroot}%{_prefix}| : qq|DESTDIR=%{buildroot}| '`

cmd=/usr/share/spec-helper/compress_files
[ -x $cmd ] || cmd=/usr/lib/rpm/brp-compress
[ -x $cmd ] && $cmd

# SuSE Linux
if [ -e /etc/SuSE-release -o -e /etc/UnitedLinux-release ]
then
    %{__mkdir_p} %{buildroot}/var/adm/perl-modules
    %{__cat} `find %{buildroot} -name "perllocal.pod"`  \
        | %{__sed} -e s+%{buildroot}++g                 \
        > %{buildroot}/var/adm/perl-modules/%{name}
fi

# remove special files
find %{buildroot} -name "perllocal.pod" \
    -o -name ".packlist"                \
    -o -name "*.bs"                     \
    |xargs -i rm -f {}

# no empty directories
find %{buildroot}%{_prefix}             \
    -type d -depth                      \
    -exec rmdir {} \; 2>/dev/null

%{__perl} -MFile::Find -le '
    find({ wanted => \&wanted, no_chdir => 1}, "%{buildroot}");
    print "%doc  pdoc demo Changes README";
    for my $x (sort @dirs, @files) {
        push @ret, $x unless indirs($x);
        }
    print join "\n", sort @ret;

    sub wanted {
        return if /auto$/;

        local $_ = $File::Find::name;
        my $f = $_; s|^\Q%{buildroot}\E||;
        return unless length;
        return $files[@files] = $_ if -f $f;

        $d = $_;
        /\Q$d\E/ && return for reverse sort @INC;
        $d =~ /\Q$_\E/ && return
            for qw|/etc %_prefix/man %_prefix/bin %_prefix/share|;

        $dirs[@dirs] = $_;
        }

    sub indirs {
        my $x = shift;
        $x =~ /^\Q$_\E\// && $x ne $_ && return 1 for @dirs;
        }
    ' > %filelist

[ -z %filelist ] && {
    echo "ERROR: empty %files listing"
    exit -1
    }

%clean
[ "%{buildroot}" != "/" ] && rm -rf %{buildroot}

%files -f %filelist
%defattr(-,root,root)

%changelog
* Thu Jan 28 2010 rpm@janus.arix.com
- Initial build.